clean metagenomic sequencing data Search Results


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The reconstructed MAGs from L6 ( A ) and L18 ( B ) consortia. Sankey diagrams showed recovered archaeal and bacterial MAG information at different taxonomic levels (relative abundance > 1%), based on the GTDB classification. Numbers indicate the relative abundance of MAGs recovered for that lineage. Relative abundance was determined by mapping each MAG against quality-filtered <t>metagenome</t> reads using CoverM. Significant differences between L6 and L18 consortia are marked with asterisks ( p < 0.05). Data are from three biological replicates
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The reconstructed MAGs from L6 ( A ) and L18 ( B ) consortia. Sankey diagrams showed recovered archaeal and bacterial MAG information at different taxonomic levels (relative abundance > 1%), based on the GTDB classification. Numbers indicate the relative abundance of MAGs recovered for that lineage. Relative abundance was determined by mapping each MAG against quality-filtered <t>metagenome</t> reads using CoverM. Significant differences between L6 and L18 consortia are marked with asterisks ( p < 0.05). Data are from three biological replicates
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The reconstructed MAGs from L6 ( A ) and L18 ( B ) consortia. Sankey diagrams showed recovered archaeal and bacterial MAG information at different taxonomic levels (relative abundance > 1%), based on the GTDB classification. Numbers indicate the relative abundance of MAGs recovered for that lineage. Relative abundance was determined by mapping each MAG against quality-filtered <t>metagenome</t> reads using CoverM. Significant differences between L6 and L18 consortia are marked with asterisks ( p < 0.05). Data are from three biological replicates
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The reconstructed MAGs from L6 ( A ) and L18 ( B ) consortia. Sankey diagrams showed recovered archaeal and bacterial MAG information at different taxonomic levels (relative abundance > 1%), based on the GTDB classification. Numbers indicate the relative abundance of MAGs recovered for that lineage. Relative abundance was determined by mapping each MAG against quality-filtered <t>metagenome</t> reads using CoverM. Significant differences between L6 and L18 consortia are marked with asterisks ( p < 0.05). Data are from three biological replicates
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DOE Systems Biology Knowledgebase genome extraction from shotgun metagenome sequence data narrative
The reconstructed MAGs from L6 ( A ) and L18 ( B ) consortia. Sankey diagrams showed recovered archaeal and bacterial MAG information at different taxonomic levels (relative abundance > 1%), based on the GTDB classification. Numbers indicate the relative abundance of MAGs recovered for that lineage. Relative abundance was determined by mapping each MAG against quality-filtered <t>metagenome</t> reads using CoverM. Significant differences between L6 and L18 consortia are marked with asterisks ( p < 0.05). Data are from three biological replicates
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LC Sciences shotgun metagenomic sequencing and data analysis
The reconstructed MAGs from L6 ( A ) and L18 ( B ) consortia. Sankey diagrams showed recovered archaeal and bacterial MAG information at different taxonomic levels (relative abundance > 1%), based on the GTDB classification. Numbers indicate the relative abundance of MAGs recovered for that lineage. Relative abundance was determined by mapping each MAG against quality-filtered <t>metagenome</t> reads using CoverM. Significant differences between L6 and L18 consortia are marked with asterisks ( p < 0.05). Data are from three biological replicates
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Johns Hopkins HealthCare metagenomic whole genome sequencing (wgs) data
The reconstructed MAGs from L6 ( A ) and L18 ( B ) consortia. Sankey diagrams showed recovered archaeal and bacterial MAG information at different taxonomic levels (relative abundance > 1%), based on the GTDB classification. Numbers indicate the relative abundance of MAGs recovered for that lineage. Relative abundance was determined by mapping each MAG against quality-filtered <t>metagenome</t> reads using CoverM. Significant differences between L6 and L18 consortia are marked with asterisks ( p < 0.05). Data are from three biological replicates
Metagenomic Whole Genome Sequencing (Wgs) Data, supplied by Johns Hopkins HealthCare, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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The reconstructed MAGs from L6 ( A ) and L18 ( B ) consortia. Sankey diagrams showed recovered archaeal and bacterial MAG information at different taxonomic levels (relative abundance > 1%), based on the GTDB classification. Numbers indicate the relative abundance of MAGs recovered for that lineage. Relative abundance was determined by mapping each MAG against quality-filtered metagenome reads using CoverM. Significant differences between L6 and L18 consortia are marked with asterisks ( p < 0.05). Data are from three biological replicates

Journal: Biotechnology for Biofuels and Bioproducts

Article Title: Comparative metagenomics reveals the metabolic flexibility of coastal prokaryotic microbiomes contributing to lignin degradation

doi: 10.1186/s13068-025-02605-w

Figure Lengend Snippet: The reconstructed MAGs from L6 ( A ) and L18 ( B ) consortia. Sankey diagrams showed recovered archaeal and bacterial MAG information at different taxonomic levels (relative abundance > 1%), based on the GTDB classification. Numbers indicate the relative abundance of MAGs recovered for that lineage. Relative abundance was determined by mapping each MAG against quality-filtered metagenome reads using CoverM. Significant differences between L6 and L18 consortia are marked with asterisks ( p < 0.05). Data are from three biological replicates

Article Snippet: The metagenome sequencing data were deposited in the NCBI SRA database under the accession number PRJNA1113784, as well as in the NODE ( https://www.biosino.org/node/ ) under project ID OEP005460 (Experimental ID OEX00028629).

Techniques: